compdata {RNAprobR} | R Documentation |
Add metadata present in GRanges made by comp() function (termination count (TC), termination-coverage ratio (TCR), coverage (Cover) and priming count (PC)) to GRanges made by normalizing functions (dtcr(), slograt(), swinsor(), compdata()).
compdata(Comp_GR, nt_offset = 1, add_to)
Comp_GR |
GRanges object made by comp() function. |
nt_offset |
how many nucleotides before modification the reverse transcription terminates (default: 1) |
add_to |
normalized data frame with already performed normalization of another kind. Results will be merged |
norm_GR |
norm_GR GRanges extended by metadata from Comp_GR |
Lukasz Jan Kielpinski, Nikos Sidiropoulos
comp
, dtcr
, slograt
,
swinsor
, GR2norm_df
, plotRNA
,
norm2bedgraph
dummy_euc_GR_treated <- GRanges(seqnames="DummyRNA", IRanges(start=round(runif(100)*100), width=round(runif(100)*100+1)), strand="+", EUC=round(runif(100)*100)) dummy_comp_GR_treated <- comp(dummy_euc_GR_treated) dummy_swinsor <- swinsor(dummy_comp_GR_treated) dummy_swinsor <- compdata(Comp_GR=dummy_comp_GR_treated, add_to=dummy_swinsor) dummy_swinsor