ModInosine-functions {RNAmodR} | R Documentation |
All of the functions of Modifier
and
the ModifierSet
classes are
inherited by the ModInosine
and ModSetInosine
classes.
Check below for the specifically implemented functions.
## S4 replacement method for signature 'ModInosine' settings(x) <- value ## S4 method for signature 'ModInosine' aggregateData(x) ## S4 method for signature 'ModInosine' findMod(x) ## S4 method for signature 'ModInosine' getDataTrack(x, name, type, ...) ## S4 method for signature 'ModInosine,GRanges' plotDataByCoord(x, coord, type = "score", window.size = 15L, ...) ## S4 method for signature 'ModInosine' plotData(x, name, from = 1L, to = 30L, type = "score", ...) ## S4 method for signature 'ModSetInosine,GRanges' plotDataByCoord(x, coord, type = "score", window.size = 15L, ...) ## S4 method for signature 'ModSetInosine' plotData(x, name, from = 1L, to = 30L, type = "score", ...)
x |
a |
value |
See |
coord, name, from, to, type, window.size, ... |
See
|
ModInosine
specific arguments for plotData:
colour.bases
- a named character vector of length = 4
for the colours of the individual bases. The names are expected to be
c("G","A","U","C")
settings
See settings
.
aggregate
See aggregate
.
modify
See modify
.
getDataTrack
a list of
DataTrack
objects. See
plotDataByCoord
.
plotData
See plotDataByCoord
.
plotDataByCoord
See plotDataByCoord
.
data(msi,package="RNAmodR") mi <- msi[[1]] settings(mi) ## Not run: aggregate(mi) modify(mi) ## End(Not run) getDataTrack(mi, "1", mainScore(mi))