ModRiboMethSeq-functions {RNAmodR.RiboMethSeq} | R Documentation |
All of the functions of Modifier
and
the ModifierSet
classes are
inherited by the ModRiboMethSeq
and ModSetRiboMethSeq
classes.
## S4 replacement method for signature 'ModRiboMethSeq' settings(x) <- value ## S4 method for signature 'ModRiboMethSeq' aggregateData(x) ## S4 method for signature 'ModRiboMethSeq' findMod(x) ## S4 method for signature 'ModRiboMethSeq' getDataTrack(x, name, type, ...) ## S4 method for signature 'ModRiboMethSeq,GRanges' plotDataByCoord( x, coord, type = c("ends", "scoreA", "scoreB", "scoreRMS", "scoreMean"), window.size = 15L, ... ) ## S4 method for signature 'ModRiboMethSeq' plotData( x, name, from = 1L, to = 30L, type = c("ends", "scoreA", "scoreB", "scoreRMS", "scoreMean"), ... ) ## S4 method for signature 'ModSetRiboMethSeq,GRanges' plotDataByCoord( x, coord, type = c("scoreRMS", "ends", "scoreA", "scoreB", "scoreMean"), window.size = 15L, ... ) ## S4 method for signature 'ModSetRiboMethSeq' plotData( x, name, from = 1L, to = 30L, type = c("scoreRMS", "ends", "scoreA", "scoreB", "scoreMean"), ... )
x |
a |
value |
See |
coord, name, from, to, type, window.size, ... |
See
|
ModRiboMethSeq
specific arguments for
plotData
:
colour
- a named character vector of length = 4
for the colours of the individual histograms. The names are expected to be
c("ends","scoreA","scoreB","scoreRMS","scoreMean")
settings
See
settings
.
aggregate
See aggregate
.
modify
See modify
.
getDataTrack
a list of
DataTrack
object.
plotData
See
plotDataByCoord
.
plotDataByCoord
See
plotDataByCoord
.
data(msrms,package="RNAmodR.RiboMethSeq") mrms <- msrms[[1]] settings(mrms) aggregate(mrms) modify(mrms) getDataTrack(mrms, "1", mainScore(mrms))