ModAlkAnilineSeq-functions {RNAmodR.AlkAnilineSeq} | R Documentation |
All of the functions of Modifier
and
the ModifierSet
classes are
inherited by the ModAlkAnilineSeq
and ModSetAlkAnilineSeq
classes.
## S4 replacement method for signature 'ModAlkAnilineSeq' settings(x) <- value ## S4 method for signature 'ModAlkAnilineSeq' aggregateData(x) ## S4 method for signature 'ModAlkAnilineSeq' findMod(x) ## S4 method for signature 'ModAlkAnilineSeq' getDataTrack(x, name, type, ...) ## S4 method for signature 'ModAlkAnilineSeq,GRanges' plotDataByCoord( x, coord, type = c("ends", "scoreNC", "scoreSR"), window.size = 15L, ... ) ## S4 method for signature 'ModAlkAnilineSeq' plotData( x, name, from = 1L, to = 30L, type = c("ends", "scoreNC", "scoreSR"), ... ) ## S4 method for signature 'ModSetAlkAnilineSeq,GRanges' plotDataByCoord( x, coord, type = c("scoreNC", "scoreSR", "ends"), window.size = 15L, ... ) ## S4 method for signature 'ModSetAlkAnilineSeq' plotData( x, name, from = 1L, to = 30L, type = c("scoreNC", "scoreSR", "ends"), ... )
x |
a |
value |
See |
coord, name, from, to, type, window.size, ... |
See
|
ModAlkAnilineSeq
specific arguments for plotData:
colour
- a named character vector of length = 4
for the colours of the individual histograms. The names are expected to be
c("scoreNC","scoreSR")
settings
See
settings
.
aggregate
See aggregate
.
modify
See modify
.
getDataTrack
a list of
DataTrack
object.
plotData
See
plotDataByCoord
.
plotDataByCoord
See
plotDataByCoord
.
data(msaas,package="RNAmodR.AlkAnilineSeq") maas <- msaas[[1]] settings(maas) aggregate(maas) modify(maas) getDataTrack(maas, "1", mainScore(maas))