processProblematicPeaks {RMassBank}R Documentation

Generate list of problematic peaks

Description

Generates a list of intense unmatched peaks for further review (the "failpeak list") and exports it if the archive name is given.

Usage

processProblematicPeaks(w, archivename = NA)

Arguments

w

msmsWorkspace to analyze.

archivename

Base name of the archive to write to (for "abc" the exported failpeaks list will be "abc_Failpeaks.csv"). if the compoundlist is complete, "tentative", if at least a formula is present or "unknown" if the only know thing is the m/z

mode

Processing mode (pH etc)

Value

Returns the aggregate data.frame with added column "problematic" (logical) which marks peaks which match the problematic criteria

Author(s)

stravsmi


[Package RMassBank version 3.0.0 Index]