findMsMsHRperxcms {RMassBank} | R Documentation |
Picks peaks from mz-files and returns the pseudospectra that CAMERA creates with the help of XCMS
findMsMsHRperxcms( fileName, cpdID, mode = "pH", findPeaksArgs = NULL, plots = FALSE, MSe = FALSE ) findMsMsHRperxcms.direct( fileName, cpdID, mode = "pH", findPeaksArgs = NULL, plots = FALSE, MSe = FALSE )
fileName |
The path to the mz-file that should be read |
cpdID |
The compoundID(s) of the compound that has been used for the file |
mode |
The ionization mode that has been used for the spectrum represented by the peaklist |
findPeaksArgs |
A list of arguments that will be handed to the xcms-method findPeaks via do.call |
plots |
A parameter that determines whether the spectra should be plotted or not |
MSe |
A boolean value that determines whether the spectra were recorded using MSe or not |
The spectra generated from XCMS
findMsMsHRperxcms.direct
: A submethod of findMsMsHrperxcms that retrieves basic spectrum data
Erik Mueller
## Not run: fileList <- list.files(system.file("XCMSinput", package = "RMassBank"), "Glucolesquerellin", full.names=TRUE)[3] loadList(system.file("XCMSinput/compoundList.csv",package="RMassBank")) psp <- findMsMsHRperxcms(fileList,2184) ## End(Not run)