makeDocument {RIPAT} | R Documentation |
Rearrange the result from annotation functions.
makeDocument(res, dataType, excelOut = TRUE, includeUndecided = FALSE, outPath = getwd(), outFileName = paste0('RIPAT', round(unclass(Sys.time()))))
res |
a GR object. This object is output of |
dataType |
a character vector. User enter the annotation type of input such as gene, cpg, repeat and variant. |
excelOut |
TRUE or FALSE. If user want to make excel file, enter TRUE. Default is TRUE. |
includeUndecided |
TRUE or FALSE. If user want to use undecided hits in analysis, enter TRUE. Default is FALSE. |
outPath |
an string vector. Plots are saved in this path. Default value is R home directory. |
outFileName |
a character vector. Attached ID to the result file name. |
Make output table and excel files about vector integration sites and proportion test result.
data(blast_gene) makeDocument(res = blast_gene, dataType = 'gene', outFileName = 'blast_gene_res')