referenceSequences {R453Plus1Toolbox}R Documentation

Access the reference sequences of an AVASet

Description

This function give access to a slot of an instance of the AVASet storing information about all reference sequences of the amplicons.

Usage

referenceSequences(object)

Arguments

object

An link{AVASet-class} object.

Value

The data is stored in an object of class AlignedRead and thus gives information about all reference sequences and their position on a chromosome (if alignShortReads has been called before).

Author(s)

Christoph Bartenhagen

See Also

alignShortReads

Examples


    # load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
    data(avaSetExample)

    referenceSequences(avaSetExample)


[Package R453Plus1Toolbox version 1.40.0 Index]