qqplotRotatedResiduals {PhenStat} | R Documentation |
Graph function for the Mixed Model framework's results. Creates a Q-Q plot of rotated residuals.
qqplotRotatedResiduals(phenTestResult,outputMessages=TRUE)
phenTestResult |
instance of the |
outputMessages |
flag: "FALSE" value to suppress output messages; "TRUE" value to show output messages; default value TRUE |
Empty.
Natalja Kurbatova, Natasha Karp, Jeremy Mason
Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410
Houseman, E. A., Ryan, L. M., Coull, B. A. (2004): Cholesky residuals for assessing normal errors in a linear model with correlated outcomes. Journal of the American Statistical Association 99466: pg 383-394. Doi 10.1198
West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.
file <- system.file("extdata", "test2.csv", package="PhenStat") test <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'), dataset.colname.weight="Weight.Value", testGenotype="Arid4a/Arid4a", hemiGenotype="Arid4a/+") result <- PhenStat:::testDataset(test, depVariable="Cl") PhenStat:::qqplotRotatedResiduals(result)