printLROutput {PhenStat} | R Documentation |
Prints out for linear regression output
printLROutput(phenTestResult,phenotypeThreshold=0.01)
phenTestResult |
instance of the |
effectValues |
a vector with genotype effect and standard error for the linear regression; mandatory argument |
phenotypeThreshold |
a numerical value defining the threshold to use in classificationTag; default value 0.01 |
Prints out the common part of linear regression output.
Natalja Kurbatova, Natasha Karp, Jeremy Mason
Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410
West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.
file <- system.file("extdata", "testLR.csv", package="PhenStat") testLR <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'), testGenotype="Mock") testLR2 <- PhenStat:::LRDataset(testLR,"V2") resultLR <- PhenStat:::testDataset(testLR2, depVariable="V2", method="LR") PhenStat:::printLROutput(resultLR)