gwc {PharmacoGx} | R Documentation |
Calculate the gwc score between two vectors, using either a weighted spearman or pearson correlation
gwc( x1, p1, x2, p2, method.cor = c("pearson", "spearman"), nperm = 10000, truncate.p = 1e-16, ... )
x1 |
|
p1 |
|
x2 |
|
p2 |
|
method.cor |
|
nperm |
|
truncate.p |
|
... |
Other passed down to internal functions |
numeric
a vector of two values, the correlation and associated p-value.
data(CCLEsmall) x <- molecularProfiles(CCLEsmall,"rna")[,1] y <- molecularProfiles(CCLEsmall,"rna")[,2] x_p <- rep(0.05, times=length(x)) y_p <- rep(0.05, times=length(y)) names(x_p) <- names(x) names(y_p) <- names(y) gwc(x,x_p,y,y_p, nperm=100)