log2CPM {PathoStat}R Documentation

Compute log2(counts per mil reads) and library size for each sample

Description

Compute log2(counts per mil reads) and library size for each sample

Usage

log2CPM(qcounts, lib.size = NULL)

Arguments

qcounts

quantile normalized counts

lib.size

default is colsums(qcounts)

Value

list containing log2(quantile counts per mil reads) and library sizes

Examples

log2CPM(matrix(1:12, nrow = 3))

[Package PathoStat version 1.16.0 Index]