findTaxonomy {PathoStat}R Documentation

Find the taxonomy for unlimited tids

Description

Find the taxonomy for unlimited tids

Usage

findTaxonomy(tids)

Arguments

tids

Given taxonomy ids

Value

taxondata Data with the taxonomy information

Examples

example_data_dir <- system.file("example/data", package = "PathoStat")
pathoreport_file_suffix <- "-sam-report.tsv"
datlist <- readPathoscopeData(example_data_dir, pathoreport_file_suffix,
input.files.name.vec = as.character(1:6))
dat <- datlist$data
ids <- rownames(dat)
tids <- unlist(lapply(ids, FUN = grepTid))
# taxonLevels <- findTaxonomy(tids[1:5])

[Package PathoStat version 1.16.0 Index]