findTaxonomy300 {PathoStat}R Documentation

Find the taxonomy for maximum 300 tids

Description

Find the taxonomy for maximum 300 tids

Usage

findTaxonomy300(tids)

Arguments

tids

Given taxonomy ids

Value

taxondata Data with the taxonomy information

Examples

example_data_dir <- system.file("example/data", package = "PathoStat")
pathoreport_file_suffix <- "-sam-report.tsv"
datlist <- readPathoscopeData(example_data_dir, 
pathoreport_file_suffix, input.files.name.vec = as.character(1:6))
dat <- datlist$data
ids <- rownames(dat)
tids <- unlist(lapply(ids, FUN = grepTid))
# taxonLevels <- findTaxonomy300(tids[1:5])

[Package PathoStat version 1.16.0 Index]