TranslateIdToTaxLevel {PathoStat}R Documentation

Find the taxonomy for the given taxon id name

Description

Find the taxonomy for the given taxon id name

Usage

TranslateIdToTaxLevel(pstat, input.id.vec, tax.level)

Arguments

pstat

pathostat object

input.id.vec

names containing id

tax.level

target taxon level

Value

target taxon level names

Examples

data_dir_test <- system.file("data", package = "PathoStat")
pstat_test <- loadPstat(indir=data_dir_test,
infileName="pstat_data_2_L1.rda")
names.new <- TranslateIdToTaxLevel(pstat_test,
c("ti|862962|org|Bacteroides_fragilis_638R",
"ti|697329|org|Ruminococcus_albus_7" ),
"genus")

[Package PathoStat version 1.16.0 Index]