maxAligned {PWMEnrich}R Documentation

Returned the aligned motif parts

Description

This function takes the offset of first motif relative to second and chops off the end of both motifs that are not aligned. It returns a list containing only the columns that align.

Usage

maxAligned(m1, m2, offset)

Arguments

m1

frequency matrix of first motif

m2

frequency matrix of second motif

offset

a number of nucleotides by which the first motif is offsetted compared to the second

Value

a list of column-trimmed motifs m1, m2


[Package PWMEnrich version 4.26.0 Index]