PREDAResults2GenomicRegionsSingle {PREDA} | R Documentation |
identify significant genomic regions from a single analysis in a PREDAResults object
Description
identify significant genomic regions from a single analysis in a PREDAResults object
Usage
# PREDAResults2GenomicRegionsSingle(.Object,
# qval.threshold=0.05, analysisName=NULL,
# use.referencePositions=TRUE, smoothStatistic.tail=NULL,
# smoothStatistic.threshold=NULL)
PREDAResults2GenomicRegionsSingle(.Object, ...)
Arguments
.Object |
Object of class PREDAResults or PREDADataAndResults
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... |
See below
- qval.threshold:
-
q-value threshold used to identify significant genomic regions
- analysisName:
-
name of the analysis to be considered
- use.referencePositions:
-
Logical, if TRUE the input reference positions used for PREDA
analysis wil be used to identify significant genomic regions
boundaries as well.
- smoothStatistic.tail:
-
Possible values are "upper" or "lower". This parameter specify
if only one tail of the smoothed statististic distribution must
be considered. If it is NULL, both tails are used and
smoothStatistic.threshold is ignored.
- smoothStatistic.threshold:
-
Threshold on smoothStatistic values to select significant
genomic regions.
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[Package
PREDA version 1.36.0
Index]