segReadsPE-class {PICS}R Documentation

Classe and methods for candidate regions from paired-end data

Description

A segReadsPE object represents a single candoidate region, including all its informative reads and mappability profile.

Usage

segReadsPE(yF, yR, yFm, yRm, cF, cR, cFm, cRm, map, chr)

Arguments

yF

A numeric vector. Forward reads.

yR

A numeric vector. Reverse reads.

yFm

A numeric vector. Forward reads on paired end.

yRm

A numeric vector. Reverse reads on paired end.

cF

A numeric vector. Forward reads for the controls.

cR

A numeric vector. Reverse reads for the controls.

cFm

A numeric vector. Forward reads on paired end for the controls.

cRm

A numeric vector. Reverse reads on paired end for the controls.

map

A matrix. The mappability profile.

chr

A character. Chromosome name.

Functions

Note

segReadsPE objects are not meant to be built via the constructors. The constructors are used in segmentPICS.


[Package PICS version 2.34.0 Index]