get_signed_ptms {OmnipathR} | R Documentation |
ptms data does not contain sign (activation/inhibition), we generate this information based on the interaction network
get_signed_ptms( ptms = import_omnipath_enzsub(), interactions = import_omnipath_interactions() )
ptms |
ptms data frame generated by |
interactions |
interaction data frame generated by
|
data.frame of ptms with is_inhibition and is_stimulation columns
import_omnipath_enzsub
import_omnipath_interactions
ptms = import_omnipath_enzsub(resources=c("PhosphoSite", "SIGNOR")) interactions = import_omnipath_interactions() ptms = get_signed_ptms(ptms,interactions)