get_signed_ptms {OmnipathR}R Documentation

get signs for ptms interactions

Description

ptms data does not contain sign (activation/inhibition), we generate this information based on the interaction network

Usage

get_signed_ptms(
  ptms = import_omnipath_enzsub(),
  interactions = import_omnipath_interactions()
)

Arguments

ptms

ptms data frame generated by import_omnipath_enzsub

interactions

interaction data frame generated by import_omnipath_interactions

Value

data.frame of ptms with is_inhibition and is_stimulation columns

See Also

import_omnipath_enzsub import_omnipath_interactions

Examples

ptms = import_omnipath_enzsub(resources=c("PhosphoSite", "SIGNOR"))
interactions = import_omnipath_interactions()
ptms = get_signed_ptms(ptms,interactions)

[Package OmnipathR version 2.0.0 Index]