print_path_vs {OmnipathR} | R Documentation |
Prints the interactions in the path in a nice format.
print_path_vs(nodeSeq, G) printPath_vs(...)
nodeSeq |
node sequence |
G |
igraph object (from ptms or interactions) |
... |
Passed to |
Interactions displayed in a nice format
interactions = import_omnipath_interactions(resources=c("SignaLink3")) OPI_g = interaction_graph(interactions = interactions ) print_path_vs( all_shortest_paths( OPI_g, from = "TYRO3", to = "STAT3" )$vpath, OPI_g ) ptms = import_omnipath_enzsub(resources=c("PhosphoSite", "SIGNOR")) ptms_g = ptms_graph(ptms) print_path_vs( all_shortest_paths( ptms_g, from = "SRC", to = "STAT1" )$res, ptms_g )