visualizeFeature {OmicsLonDA} | R Documentation |
Visualize Longitudinal Feature
visualizeFeature(se_object = NULL, text = "featureName", unit = "days", ylabel = "Normalized Count", col = c("blue", "firebrick"), prefix = "Test")
se_object |
SummarizedExperiment object contains omics count/level matrix and metadata |
text |
feature name |
unit |
time interval unit |
ylabel |
text to be shown on the y-axis of all generated figures (default: "Normalized Count") |
col |
two color to be used for the two groups (eg., c("red", "blue")). |
prefix |
prefix to be used to create directory for the analysis results |
null
Ahmed Metwally (ametwall@stanford.edu)
library(SummarizedExperiment) data("omicslonda_data_example") omicslonda_se_object_adjusted = adjustBaseline( se_object = omicslonda_data_example$omicslonda_se_object) omicslonda_test_object = omicslonda_se_object_adjusted[1,] visualizeFeature(se_object = omicslonda_test_object, text = "Feature_1", unit = "days", ylabel = "Normalized Count", col = c("blue", "firebrick"), prefix = tempfile())