subTAXset {OTUbase} | R Documentation |
Function to get a subset of an TAXset object.
subTAXset(object, samples)
object |
An TAXset object |
samples |
A list of sample names |
subTAXset
returns an TAXset
## locate directory with data dirPath <- system.file("extdata/Sogin_2006", package="OTUbase") ## read in data into TAXset object soginTAX <- readTAXset(dirPath=dirPath, samplefile="sogin.groups", fastafile="sogin.fasta", taxfile="sogin.unique.fix.tax",namefile="sogin.names", sampleADF="sample_metadata.txt") ## get subset of soginTAX subTAXset(soginTAX, samples=getSamples(soginTAX, colnum="Site", value="Labrador", exact=FALSE))