STAR.remove.crashed.genome {ORFik} | R Documentation |
This happens if you abort STAR run early, and it halts at: ..... loading genome
STAR.remove.crashed.genome(index.path, star.path = STAR.install())
index.path |
path to index folder of genome |
star.path |
path to STAR, default: STAR.install(), if you don't have STAR installed at default location, it will install it there, set path to a runnable star if you already have it. |
return value from system call, 0 if all good.
Other STAR:
STAR.align.folder()
,
STAR.align.single()
,
STAR.allsteps.multiQC()
,
STAR.index()
,
STAR.install()
,
STAR.multiQC()
,
getGenomeAndAnnotation()
,
install.fastp()
index.path = "/home/data/human_GRCh38/STAR_INDEX/genomeDir/" # STAR.remove.crashed.genome(index.path = index.path) ## If you have the index argument from STAR.index function: # index.path <- STAR.index() # STAR.remove.crashed.genome(file.path(index.path, "genomeDir")) # STAR.remove.crashed.genome(file.path(index.path, "contaminants_genomeDir"))