find_url_ebi {ORFik}R Documentation

Locates and check if fastq files exists in ebi

Description

Look for files in ebi following url: ftp://ftp.sra.ebi.ac.uk/vol1/fastq Paired end and single end fastq files

Usage

find_url_ebi(SRR, stop.on.error = FALSE)

Arguments

SRR

character, SRR, ERR or DRR numbers.

stop.on.error

logical FALSE, if true will stop if all files are not found.

Value

full url to fastq files, same length as input (2 urls for paired end data). Returns empty character() if all files not found.


[Package ORFik version 1.10.13 Index]