list.experiments {ORFik} | R Documentation |
Will only search .csv extension, also exclude any experiment with the word template.
list.experiments( dir = "~/Bio_data/ORFik_experiments/", pattern = "*", libtypeExclusive = NULL, BPPARAM = bpparam() )
dir |
directory for ORFik experiments: default: "~/Bio_data/ORFik_experiments/" |
pattern |
allowed patterns in experiment file name: default ("*", all experiments) |
libtypeExclusive |
search for experiments with exclusivly this libtype, default (NULL, all) |
BPPARAM |
how many cores/threads to use? default: bpparam() |
a data.table, 1 row per experiment with columns experiment (name), libtypes
## Make your experiments df <- ORFik.template.experiment(TRUE) df2 <- df[1:6,] # Only first 2 libs ## Save them # save.experiment(df, "~/Bio_data/ORFik_experiments/exp1.csv") # save.experiment(df2, "~/Bio_data/ORFik_experiments/exp1_subset.csv") ## List all experiment you have: ## Path above is default path, so no dir argument needed #list.experiments() #list.experiments(pattern = "subset") ## For non default directory experiments #list.experiments(dir = "MY/CUSTOM/PATH)