install.fastp {ORFik} | R Documentation |
On Linux, will not run "make", only use precompiled fastp file.
On Mac OS it will use precompiled binaries.
Does not work yet for Windows!
install.fastp(folder = "~/bin")
folder |
path to folder for download, file will be named "fastp", this should be most recent version. On mac it will search for a folder called fastp-master inside folder given. Since there is no precompiled version of fastp for Mac OS. |
path to runnable fastp
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6129281/
Other STAR:
STAR.align.folder()
,
STAR.align.single()
,
STAR.allsteps.multiQC()
,
STAR.index()
,
STAR.install()
,
STAR.multiQC()
,
STAR.remove.crashed.genome()
,
getGenomeAndAnnotation()
## With default folder: #install.fastp() ## Or set manual folder: folder <- "~/I/WANT/IT/HERE/" #install.fastp(folder)