config.save {ORFik} | R Documentation |
Defines a folder for fastq files (raw_data), bam files (processed data) and references (organism annotation and STAR index)
config.save( file = "~/Bio_data/ORFik_config.csv", fastq.dir, bam.dir, reference.dir )
file |
file of config for ORFik, default: "~/Bio_data/ORFik_config.csv" |
fastq.dir |
directory where ORFik puts fastq file directories, default: config()["fastq"] |
bam.dir |
directory where ORFik puts bam file directories, default: config()["bam"] |
reference.dir |
directory where ORFik puts reference file directories, default: config()["ref"] |
invisible(NULL), file saved to disc