assignLastExonsStopSite {ORFik} | R Documentation |
Per group in GRangesList, assign the most upstream site.
assignLastExonsStopSite( grl, newStops, is.circular = all(isCircular(grl) %in% TRUE) )
grl |
a |
newStops |
an integer vector of same length as grl, with new start values (absolute coordinates, not relative) |
is.circular |
logical, default FALSE if not any is: all(isCircular(grl) Where grl is the ranges checked. If TRUE, allow ranges to extend below position 1 on chromosome. Since circular genomes can have negative coordinates. |
make sure your grl is sorted, since stop of "-" strand objects should be the min start in group, use ORFik:::sortPerGroup(grl) to get sorted grl.
the same GRangesList with new stop sites
Other GRanges:
assignFirstExonsStartSite()
,
downstreamFromPerGroup()
,
downstreamOfPerGroup()
,
upstreamFromPerGroup()
,
upstreamOfPerGroup()