bamVarName {ORFik} | R Documentation |
experiment
What will each sample be called given the columns of the experiment?
bamVarName( df, skip.replicate = length(unique(df$rep)) == 1, skip.condition = length(unique(df$condition)) == 1, skip.stage = length(unique(df$stage)) == 1, skip.fraction = length(unique(df$fraction)) == 1, skip.experiment = !df@expInVarName, skip.libtype = FALSE )
df |
an ORFik |
skip.replicate |
a logical (FALSE), don't include replicate in variable name. |
skip.condition |
a logical (FALSE), don't include condition in variable name. |
skip.stage |
a logical (FALSE), don't include stage in variable name. |
skip.fraction |
a logical (FALSE), don't include fraction |
skip.experiment |
a logical (FALSE), don't include experiment |
skip.libtype |
a logical (FALSE), don't include libtype |
variable names of libraries (character vector)
Other ORFik_experiment:
ORFik.template.experiment()
,
create.experiment()
,
experiment-class
,
filepath()
,
libraryTypes()
,
organism.df()
,
outputLibs()
,
read.experiment()
,
save.experiment()
,
validateExperiments()
df <- ORFik.template.experiment() bamVarName(df) ## without libtype bamVarName(df, skip.libtype = TRUE) ## Without experiment name bamVarName(df, skip.experiment = TRUE)