QC_count_tables {ORFik} | R Documentation |
The better the annotation / gtf used, the more results you get.
QC_count_tables(df, out.dir, type = "ofst", BPPARAM = bpparam())
df |
an ORFik |
out.dir |
optional output directory, default:
|
type |
a character(default: "default"), load files in experiment or some precomputed variant, either "ofst", "bedo", "bedoc" or "pshifted". These are made with ORFik:::convertLibs() or shiftFootprintsByExperiment(). Can also be custom user made folders inside the experiments bam folder. |
BPPARAM |
how many cores/threads to use? default: bpparam().
To see number of threads used, do |
a data.table of the count info