correlation.plots {ORFik} | R Documentation |
Get 2 correlation plots of raw counts and log2(count + 1) over selected region in: c("mrna", "leaders", "cds", "trailers")
correlation.plots( df, output.dir, region = "mrna", type = "fpkm", height = 400, width = 400, size = 0.15 )
df |
an ORFik |
output.dir |
directory to save to, 2 files named: cor_plot.png and cor_plot_log2.png |
region |
a character (default: mrna), make raw count matrices of whole mrnas or one of (leaders, cds, trailers) |
type |
which value to use, "fpkm", alternative "counts". |
height |
numeric, default 400 (in mm) |
width |
numeric, default 400 (in mm) |
size |
numeric, size of dots, default 0.15. |
invisible(NULL)