intersect {OMICsPCA}R Documentation

support function of prepareDataset

Description

intersects a factor file and an annotation file

Usage

intersect(fact, anno, ...)

Arguments

fact

Full path of the directory containing only the bed (.bed) files corresponding to several cell lines of the specified factor.

anno

Full path of the annotation file (e.g. gene, TSS, exon etc.)

...

additional arguments received from "prepareDataset()" and suppliet to "R_bedtools_intersect()"

Value

A list containing the intersections of the files (paths of which are supplied throgh the arguments).

Author(s)

Subhadeep Das

Examples


anno <- system.file("extdata/annotation2/TSS_groups.bed",
package = "OMICsPCAdata")

fact <- system.file("extdata/factors2/demofactor",
package = "OMICsPCAdata")

Cells <- intersect(fact = fact, anno = anno)

Cells

[Package OMICsPCA version 1.8.0 Index]