generateAnnotatedMatrix {NormalyzerDE}R Documentation

Generate an annotated data frame from statistics object

Description

Extracts key values (p-value, adjusted p-value, log2-fold change and average expression values) from an NormalyzerStatistics instance and appends these to the annotation- and data-matrices

Usage

generateAnnotatedMatrix(nst)

Arguments

nst

NormalyzerDE statistics object.

Value

outDf Annotated statistics matrix

Examples

data(example_stat_summarized_experiment)
statObj <- NormalyzerStatistics(example_stat_summarized_experiment)
statObj <- calculateContrasts(statObj, comparisons=c("1-2", "2-3"), condCol="group", type="limma")
annotDf <- generateAnnotatedMatrix(statObj)

[Package NormalyzerDE version 1.8.0 Index]