extractBiotype {NoRCE} | R Documentation |
Get the biotype of the non-coding genes. It is suitable for the GENCODE gtf files
extractBiotype(gtfFile)
gtfFile |
Path of the input gtf file which contains biotype information. The gtf file must be provided from the Ensembl or Gencode site. For space efficiency, gft files should be in a zip format. |
Tabular form of the gtf file with the required features such as gene id and biotypes
fileImport<-system.file("extdata", "temp.gtf", package = "NoRCE") gtf <- extractBiotype(gtfFile = fileImport)