corrbasedMrna {NoRCE} | R Documentation |
Pearson correlation coefficient value of the mRNA genes between miRNA:mRNA for a given correlation cut-off and cancer.
corrbasedMrna(mRNAgene, cancer, minAbsCor, databaseFile)
mRNAgene |
Data frame of the mRNA genes |
cancer |
Name of the TCGA project code such as 'BRCA' that is analyzed for miRNA-mRNA correlation. Possible cancer types ACC, BLCA, BRCA, CESC, CHOL, COAD, COADREAD, DLBC, ESCA, GBMLGG, HNSC, KICH, KIPAN, KIRC, KIRP, LGG, LIHC, LUAD, LUSC, OV, PAAD, PCPG, PRAD, READ, SARC, SKCM, STAD, STES, TGCT, THCA, THYM, UCEC, UCS, UVM |
minAbsCor |
Cut-off value for the Pearson correlation coefficient of the miRNA-mRNA |
databaseFile |
Path of miRcancer.db file |
Data frame of the miRNA-mRNA correlation result