LPA {MoonlightR} | R Documentation |
This function carries out the literature phenotype analysis (LPA)
LPA(dataDEGs, BP, BPlist)
dataDEGs |
is output from DEA |
BP |
is biological process |
BPlist |
is list of genes annotated in BP |
table with number of pubmed that affects, increase or decrase genes annotated in BP
data(DEGsmatrix) BPselected <- c("apoptosis") BPannotations <- DiseaseList[[match(BPselected, names(DiseaseList))]]$ID