DPA {MoonlightR}R Documentation

DPA

Description

This function carries out the differential phenotypes analysis

Usage

DPA(dataType, dataFilt, dataConsortium = "TCGA", fdr.cut = 0.01,
  logFC.cut = 1, diffmean.cut = 0.25, samplesType, colDescription,
  gset, gsetFile = "gsetFile.RData")

Arguments

dataType

selected

dataFilt

obtained from getDataTCGA

dataConsortium

is TCGA or GEO, default TCGA

fdr.cut

is a threshold to filter DEGs according their p-value corrected

logFC.cut

is a threshold to filter DEGs according their logFC

diffmean.cut

diffmean.cut for DMR

samplesType

samplesType

colDescription

colDescription

gset

gset

gsetFile

gsetFile

Value

result matrix from differential phenotype analysis

Examples

dataDEGs <- DPA(dataFilt = dataFilt, dataType = "Gene expression")

[Package MoonlightR version 1.16.0 Index]