MinDistExperiment-class {MinimumDistance}R Documentation

Class and methods for MinDistExperiment

Description

Class and methods for MinDistExperiment

Usage

## S4 method for signature 'MinDistExperiment'
show(object)

## S4 method for signature 'MinDistExperiment'
pedigree(object)

## S4 replacement method for signature 'MinDistExperiment'
pedigree(object) <- value

## S4 method for signature 'MinDistExperiment'
mindist(object)

## S4 replacement method for signature 'MinDistExperiment,ANY'
mindist(object) <- value

## S4 method for signature 'MinDistExperiment,ANY,ANY,ANY'
x[i, j, ..., drop = FALSE]

## S4 method for signature 'MinDistExperiment'
offspring(object)

## S4 method for signature 'MinDistExperiment'
father(object)

## S4 method for signature 'MinDistExperiment'
mother(object)

## S4 method for signature 'MinDistExperiment'
segment2(object, param = MinDistParam())

## S4 method for signature 'RangedSummarizedExperiment'
father(object)

## S4 method for signature 'RangedSummarizedExperiment'
mother(object)

## S4 method for signature 'RangedSummarizedExperiment'
offspring(object)

Arguments

object

a MinDistExperiment object

value

a ParentOffspring object

x

a MinDistExperiment object

i

a numeric-vector for indexing the rows (optional)

j

a numeric-vector for indexing the columns (optional)

...

additional arguments propogated to subsetting methods for RangedSummarizedExperiment

drop

logical. Whether to simplify a one-row or one-column matrix to a vector. In most cases, this should always be FALSE.

param

a MinDistParam object

Slots

mindist

a matrix

pedigree

a ParentOffspring object


[Package MinimumDistance version 1.34.0 Index]