as.data.frame.diffAnalysisClass {MicrobiotaProcess} | R Documentation |
get the table of diffAnalysisClass
## S3 method for class 'diffAnalysisClass' as.data.frame(x, ...) ## S3 method for class 'alphasample' as.data.frame(x, ...) ## S3 method for class 'diffAnalysisClass' as.data.frame(x, ...) ## S3 method for class 'alphasample' as.data.frame(x, ...)
x |
object, diffAnalysisClass |
..., |
additional parameters |
a data.frame contained results of diff_analysis
data(kostic2012crc) kostic2012crc head(phyloseq::sample_data(kostic2012crc),3) kostic2012crc <- phyloseq::rarefy_even_depth(kostic2012crc,rngseed=1024) table(phyloseq::sample_data(kostic2012crc)$DIAGNOSIS) set.seed(1024) diffres <- diff_analysis(kostic2012crc, classgroup="DIAGNOSIS", mlfun="lda", filtermod="fdr", firstcomfun = "kruskal.test", firstalpha=0.05, strictmod=TRUE, secondcomfun = "wilcox.test", subclmin=3, subclwilc=TRUE, secondalpha=0.01, lda=3) restab <- as.data.frame(diffres) head(restab)