show,diffAnalysisClass-method {MicrobiotaProcess} | R Documentation |
method extensions to show for diffAnalysisClass objects.
## S4 method for signature 'diffAnalysisClass' show(object)
object |
object, 'diffAnalysisClass' class |
print info
Shuangbin Xu
# don't run in examples #data(kostic2012crc) #kostic2012crc #head(phyloseq::sample_data(kostic2012crc),3) #kostic2012crc <- phyloseq::rarefy_even_depth(kostic2012crc,rngseed=1024) #table(phyloseq::sample_data(kostic2012crc)$DIAGNOSIS) #set.seed(1024) #diffres <- diff_analysis(kostic2012crc, classgroup="DIAGNOSIS", # mlfun="lda", filtermod="fdr", # firstcomfun = "kruskal.test", # firstalpha=0.05, strictmod=TRUE, # secondcomfun = "wilcox.test", # subclmin=3, subclwilc=TRUE, # secondalpha=0.01, lda=3) #show(diffres)