build_tree {MicrobiotaProcess} | R Documentation |
The function can be used to building tree.
build_tree(seqs, ...) ## S4 method for signature 'DNAStringSet' build_tree(seqs, ...) ## S4 method for signature 'DNAbin' build_tree(seqs, ...) ## S4 method for signature 'character' build_tree(seqs, ...)
seqs |
DNAStringSet or DNAbin, the object of R. |
..., |
additional parameters, see also |
the phylo class of tree.
Shuangbin Xu
seqtabfile <- system.file("extdata", "seqtab.nochim.rds", package="MicrobiotaProcess") seqtab <- readRDS(seqtabfile) refseq <- colnames(seqtab) names(refseq) <- paste0("OTU_",seq_len(length(refseq))) # refseq <- Biostrings::DNAStringSet(refseq) # tree <- build_tree(refseq) # or # tree <- build_tree(refseq)