get_varct.pcoa {MicrobiotaProcess} | R Documentation |
get the contribution of variables
## S3 method for class 'pcoa' get_varct(obj, ...) get_varct(obj, ...) ## S3 method for class 'prcomp' get_varct(obj, ...) ## S3 method for class 'pcasample' get_varct(obj, ...)
obj |
prcomp class or pcasample class |
... |
additional parameters. |
the VarContrib class, contained the contribution and coordinate of features.
library(phyloseq) data(GlobalPatterns) subGlobal <- subset_samples(GlobalPatterns, SampleType %in% c("Feces", "Mock", "Ocean", "Skin")) #pcares <- get_pca(subGlobal, method="hellinger") #varres <- get_varct(pcares)