read_qza {MicrobiotaProcess} | R Documentation |
the function was designed to read the ouput of qiime2.
read_qza(qzafile, parallel = FALSE)
qzafile |
character, the format of file should be one of 'BIOMV210DirFmt', 'TSVTaxonomyDirectoryFormat', 'NewickDirectoryFormat' and 'DNASequencesDirectoryFormat'. |
parallel |
logical, whether parsing the taxonomy by multi-parallel, efault is FALSE. |
list contained one or multiple object of feature table, taxonomy table, tree and represent sequences.
otuqzafile <- system.file("extdata", "table.qza", package="MicrobiotaProcess") otuqza <- read_qza(otuqzafile) str(otuqza)