panelSummary {MetaCyto}R Documentation

Summarize markers in panels.

Description

A function that summarizes markers in cytometry panels.

Usage

panelSummary(panelInfo, folder, cluster = TRUE, plotImage = TRUE,
  width = 20, height = 20)

Arguments

panelInfo

A data frame returned by the collectData function. It should contain all the information outputted by the preprocessing.batch function.

folder

The directory where the output should be written.

cluster

True or False. Used to indicate if the markers and panels should be clustered in the plot.

plotImage

True or False. Used to indicate if a plot summarizing markers in panels should be produced.

width

Used to specify the width of the plot

height

Used to specify the height of the plot

Value

A dataframe describing what markers are in each panel.

Examples

fn=system.file("extdata","",package="MetaCyto")
fn=list.files(fn,pattern="processed_sample",full.names=TRUE)
panel_info=collectData(fn,longform=FALSE)
dir.create("Example_Result")
PS=panelSummary(panel_info,"Example_Result",cluster=FALSE,width=30,height=20)

[Package MetaCyto version 1.12.0 Index]