panelSummary {MetaCyto} | R Documentation |
A function that summarizes markers in cytometry panels.
panelSummary(panelInfo, folder, cluster = TRUE, plotImage = TRUE, width = 20, height = 20)
panelInfo |
A data frame returned by the collectData function. It should contain all the information outputted by the preprocessing.batch function. |
folder |
The directory where the output should be written. |
cluster |
True or False. Used to indicate if the markers and panels should be clustered in the plot. |
plotImage |
True or False. Used to indicate if a plot summarizing markers in panels should be produced. |
width |
Used to specify the width of the plot |
height |
Used to specify the height of the plot |
A dataframe describing what markers are in each panel.
fn=system.file("extdata","",package="MetaCyto") fn=list.files(fn,pattern="processed_sample",full.names=TRUE) panel_info=collectData(fn,longform=FALSE) dir.create("Example_Result") PS=panelSummary(panel_info,"Example_Result",cluster=FALSE,width=30,height=20)