typeMatch_link0 {MetCirc} | R Documentation |
'typeMatch_link0' returns a list with accessors '"link0df"' and '"type_match"'
typeMatch_link0(similarityMatrix, spectra, type, condition)
similarityMatrix |
'matrix' with pair-wise similarity values |
spectra |
'MSpectra' object |
type |
'character', either '"mz"', '"retentionTime"', '"clustering"' |
condition |
'character', tissue |
Helper function for 'shinyCircos'.
'list' of length 2, entry 'link0df' is of 'data.frame' and entry 'type_match' that is a 'character' vector
Thomas Naake, thomasnaake@googlemail.com
data("spectra", package = "MetCirc") similarityMat <- compare_Spectra(spectra_tissue[1:10], fun = normalizeddotproduct, binSize = 0.01) ## order according to retention time MetCirc:::typeMatch_link0(similarityMatrix = similarityMat, spectra = spectra_tissue, type = "mz", condition = c("SPL", "LIM", "ANT", "STY"))