tool.translate {Mergeomics} | R Documentation |
tool.translate
converts the symbols given in the list from
into the list to
. e.g. we can translate human gene symbols into the
mouse orthologs (or vice versa) if the symbol mapping file is provided.
tool.translate(words, from, to)
words |
translation table including words (i.e. gene symbols) that will be translated |
from |
a list denoting the words will be translated from which symbols |
to |
a list denoting the words will be translated to which symbols |
words |
translated table (words) |
Ville-Petteri Makinen
syms <- tool.read(system.file("extdata", "symbols.txt", package="Mergeomics")) syms <- syms[,c("HUMAN", "MOUSE")] names(syms) <- c("FROM", "TO") moddata <- tool.read(system.file("extdata", "modules.mousecoexpr.liver.human.txt", package="Mergeomics")) moddata$NODE <- moddata$GENE moddata$NODE <- tool.translate(words=moddata$NODE, from=syms$FROM, to=syms$TO)