quant.pd.msstats {MSstatsTMT} | R Documentation |
It is made from input.pd
.
It is the output of proteinSummarization function.
It should include the required columns as below.
The variables are as follows:
quant.pd.msstats
A data frame with 100 rows and 8 variables.
Run : MS run ID
Protein : Protein ID
Abundance: Protein-level summarized abundance
Channel : Labeling information (126, ... 131)
Condition : Condition (ex. Healthy, Cancer, Time0)
BioReplicate : Unique ID for biological subject.
TechRepMixture : Unique ID for technical replicate of one TMT mixture.
Mixture : Unique ID for TMT mixture.
head(quant.pd.msstats)