adjustProteinLevel {MSstatsPTM} | R Documentation |
adjustProteinLevel
performs the adjustment with respect to protein
abundance.
adjustProteinLevel(diffSite, diffProtein)
diffSite |
A data frame for the differential analysis result of PTMs,
returned by the function |
diffProtein |
A data frame for the differential analysis result of
proteins, returned by the function |
A data frame.
sim <- PTMsimulateExperiment( nGroup=2, nRep=2, nProtein=1, nSite=1, nFeature=5, logAbundance=list( PTM=list(mu=25, delta=c(0, 1), sRep=0.2, sPeak=0.05), PROTEIN=list(mu=25, delta=c(0, 1), sRep=0.2, sPeak=0.05) ) ) summarized <- PTMsummarize(sim) estimates <- PTMestimate(summarized) res <- extractMeanDiff(estimates[["PTM"]], "G_1", "G_2", FALSE) res_prot <- extractMeanDiff(estimates[["PROTEIN"]], "G_1", "G_2", TRUE) adjustProteinLevel(res, res_prot)