MSstatsMakeAnnotation {MSstatsConvert} | R Documentation |
Create annotation
MSstatsMakeAnnotation(input, annotation, ...)
input |
data.table preprocessed by the MSstatsClean function |
annotation |
data.table |
... |
key-value pairs, where keys are names of columns of |
data.table
evidence_path = system.file("tinytest/raw_data/MaxQuant/mq_ev.csv", package = "MSstatsConvert") pg_path = system.file("tinytest/raw_data/MaxQuant/mq_pg.csv", package = "MSstatsConvert") evidence = read.csv(evidence_path) pg = read.csv(pg_path) imported = MSstatsImport(list(evidence = evidence, protein_groups = pg), "MSstats", "MaxQuant") cleaned_data = MSstatsClean(imported, protein_id_col = "Proteins") annot_path = system.file("tinytest/raw_data/MaxQuant/annotation.csv", package = "MSstatsConvert") mq_annot = MSstatsMakeAnnotation(cleaned_data, read.csv(annot_path), Run = "Rawfile") head(mq_annot)