fragmentation {MSGFplus} | R Documentation |
These functions allow you to retrieve and set the fragmentation method used during acquisition
fragmentation(object) fragmentation(object) <- value ## S4 method for signature 'msgfPar' fragmentation(object) ## S4 replacement method for signature 'msgfPar,numeric' fragmentation(object) <- value ## S4 replacement method for signature 'msgfPar,character' fragmentation(object) <- value ## S4 replacement method for signature 'msgfPar,msgfParFragmentation' fragmentation(object) <- value
object |
An msgfPar object |
value |
Either an integer, string or msgfParFragmentation object |
In case of the getter a named integer
msgfPar
: Get the fragmentation method currently used
object = msgfPar,value = numeric
: Set the fragmentation method using the key for the
method
object = msgfPar,value = character
: Set the fragmentation method using the name of the
method
object = msgfPar,value = msgfParFragmentation
: Set the fragmentation method using an
msgfParFragmentation object
Other msgfPar-getter_setter: chargeRange
,
db
, enzyme
,
instrument
, isotopeError
,
lengthRange
, matches
,
mods
, ntt
,
protocol
, tda
,
tolerance
parameters <- msgfPar(system.file(package='MSGFplus', 'extdata', 'milk-proteins.fasta')) fragmentation(parameters) <- 'CID' fragmentation(parameters) <- 3 fragmentation(parameters)