create_mofa_from_Seurat {MOFA2} | R Documentation |
Method to create a MOFA
object from a Seurat object
create_mofa_from_Seurat( seurat, groups = NULL, assays = NULL, slot = "data", features = NULL, save_metadata = FALSE )
seurat |
Seurat object |
groups |
a string specifying column name of the samples metadata to use it as a group variable.
Alternatively, a character vector with group assignment for every sample.
Default is |
assays |
assays to use, default is |
slot |
assay slot to be used such as scale.data or data (default). |
features |
a list with vectors, which are used to subset features, with names corresponding to assays; a vector can be provided when only one assay is used |
save_metadata |
logical indicating whether to incorporate the metadata from the Seurat object into the MOFA object |
Returns an untrained MOFA
object