create_mofa_from_SingleCellExperiment {MOFA2} | R Documentation |
Method to create a MOFA
object from a SingleCellExperiment object
create_mofa_from_SingleCellExperiment( sce, groups = NULL, assay = "logcounts", save_metadata = FALSE )
sce |
SingleCellExperiment object |
groups |
a string specifying column name of the colData to use it as a group variable.
Alternatively, a character vector with group assignment for every sample.
Default is |
assay |
assay to use, default is |
save_metadata |
logical indicating whether to incorporate the metadata from the SingleCellExperiment object into the MOFA object |
Returns an untrained MOFA
object