summarise_factors {MOFA2} | R Documentation |
Function to summarise factor values using a discrete grouping of samples.
summarise_factors( object, df, factors = "all", groups = "all", abs = FALSE, return_data = FALSE )
object |
a trained |
df |
a data.frame with the columns "sample" and "level", where level is a factor with discrete group assigments for each sample. |
factors |
character vector with the factor name(s), or numeric vector with the index of the factor(s) to use. Default is 'all'. |
groups |
character vector with the groups names, or numeric vector with the indices of the groups of samples to use, or "all" to use samples from all groups. |
abs |
logical indicating whether to take the absolute value of the factors (default is |
return_data |
logical indicating whether to return the fa instead of plotting |
A ggplot
object or a data.frame
if return_data is TRUE