getAdditionalInfo {MIGSA} | R Documentation |
getAdditionalInfo
gets additional enrichment information of the
analysis done.
getAdditionalInfo(migsaRes) ## S4 method for signature 'MIGSAres' getAdditionalInfo(migsaRes)
migsaRes |
MIGSAres object. |
data.frame with additional information for each analyzed gene set.
data(migsaRes) ## Lets get additional enrichment information of the MIGSAres object. adtnlInfo <- getAdditionalInfo(migsaRes) dim(adtnlInfo) # it is a huge data.frame ## This huge amount of information commonly is not that interesting. Lets ## keep the gene sets that were enriched in every experiment and check that ## information. Lets set a cutoff of 0.1. migsaResWCoff <- setEnrCutoff(migsaRes, 0.1) migsaResFiltered <- migsaResWCoff[rowSums(migsaResWCoff[, 4:5]) == 2, ] adtnlInfo <- getAdditionalInfo(migsaResFiltered) dim(adtnlInfo)