loadGo {MIGSA}R Documentation

Creates a GeneSetCollection object using the Gene Ontology data base

Description

loadGo creates a GeneSetCollection object from the data present at the Gene Ontology data base (org.Hs.eg.db R package).

Usage

loadGo(ontology)

## S4 method for signature 'character'
loadGo(ontology)

Arguments

ontology

character indicating which ontology must be loaded. Must be one of BP, MF or CC.

Value

A GeneSetCollection object (Genes are with their EntrezGene ID).

See Also

as.Genesets

Genesets-enrichr

geneSetsFromFile

Examples

## Lets load the Cellular Components gene sets from the Gene Ontology.
ccGSets <- loadGo("CC")

[Package MIGSA version 1.14.1 Index]