as.Genesets {MIGSA} | R Documentation |
as.Genesets
creates a GeneSetCollection object from the data present
in a list. Each element will parse to a GeneSet. For each list element, its
name will be the GeneSet setName, and the content are the genes.
as.Genesets(x, ...) ## S4 method for signature 'list' as.Genesets(x, is_GO = FALSE)
x |
list of character vectors which are the genes corresponding to each GeneSet. The list must have names (unique). |
... |
not in use. |
is_GO |
logical indicating if this gene sets are from the Gene Ontology. If true, then each GeneSet setName must be a GO id. |
A GeneSetCollection object.
## Lets create a list with three manually created gene sets and load it as a ## GeneSetCollection object. myGs1 <- as.character(1:10) myGs2 <- as.character(15:21) myGs3 <- as.character(25:30) myGssList <- list(myGs1, myGs2, myGs3) names(myGssList) <- c("myGs1", "myGs2", "myGs3") myGss <- as.Genesets(myGssList)