MEDIPS.couplingVector {MEDIPS} | R Documentation |
The function calculates the local densities of a defined sequence pattern (e.g. CpGs) and returns a COUPLING SET object which is necessary for normalizing MeDIP data.
MEDIPS.couplingVector(pattern="CG", refObj=NULL)
pattern |
defines the sequence pattern, e.g. CG for CpGs. |
refObj |
a MEDIPS Set or MEDIPS ROI Set that serves as reference for the genome and window parameters. |
A COUPLING SET object.
Lukas Chavez
library("MEDIPSData") library("BSgenome.Hsapiens.UCSC.hg19") data(hESCs_MeDIP) CS = MEDIPS.couplingVector(pattern="CG", refObj=hESCs_MeDIP)