MEDIPS.correlation {MEDIPS} | R Documentation |
The function calculates genome wide Pearson correlations between all pairs of provided MEDIPS SETs.
MEDIPS.correlation(MSets=NULL, plot = T, method="spearman")
MSets |
a concatenated set of MEDIPS SETs |
plot |
if specified, the correlation will be depicted as a scatter plot |
method |
default: spearman; alternatives: kendall, spearman |
a correlation matrix
Lukas Chavez
library(MEDIPSData) data(hESCs_MeDIP) data(DE_MeDIP) correlation = MEDIPS.correlation(MSets=c(hESCs_MeDIP[[1]], DE_MeDIP[[1]]), plot = FALSE)