DensityDiffView {MAGeCKFlute} | R Documentation |
Plot the density of beta score deviations.
DensityDiffView( beta, ctrlname = "Control", treatname = "Treatment", main = NULL, filename = NULL, width = 5, height = 4, ... )
beta |
Data frame, including |
ctrlname |
A character, specifying the name of control sample. |
treatname |
A character, specifying the name of treatment sample. |
main |
As in 'plot'. |
filename |
Figure file name to create on disk. Default filename="NULL", which means no output. |
width |
As in ggsave. |
height |
As in ggsave. |
... |
Other parameters in ggsave. |
An object created by ggplot
, which can be assigned and further customized.
Wubing Zhang
file3 = file.path(system.file("extdata", package = "MAGeCKFlute"), "testdata/mle.gene_summary.txt") dd = ReadBeta(file3) # Density plot of beta score deviation between control and treatment DensityDiffView(dd, ctrlname = "dmso", treatname = "plx")