LiquidAssociation-package {LiquidAssociation} | R Documentation |
The LiquidAssociation package provide methods to examine a special kind of three-way interaction called liquid association. The term liquid association was first proposed by contains functions for calculate direct and model-based estimators for liquid associaiton. It also provides functions for testing the existence of liquid associaiton given a gene triplet data.
Package: | LiquidAssociation |
Type: | Package |
Version: | 1.0.4 |
Date: | 2009-10-05 |
License: | GPL version 2 or newer |
LazyLoad: | yes |
GLA LA CNM.full CNM.simple getsGLA getsLA plotGLA
Yen-Yi Ho <yho@jhsph.edu>
Maintainer: Yen-Yi Ho <yho@jhsph.edu>
Ker-Chau Li, Genome-wide coexpression dynamics: theory and application (2002). PNAS 99 (26): 16875-16880.
Yen-Yi Ho, Leslie Cope, Thomas A. Louis, and Giovanni Parmigiani, GENERALIZED LIQUID ASSOCIATION (April 2009). Johns Hopkins University, Dept. of Biostatistics Working Papers. Working Paper 183. http://www.bepress.com/jhubiostat/paper183
data<-matrix(rnorm(300), ncol=3) colnames(data)<-c("Gene1", "Gene2", "Gene3") FitCNM.full<-CNM.full(data) FitCNM.full