write.lfmm {LEA} | R Documentation |
lfmm
formatWrite a file in the lfmm
format.
write.lfmm(R, output.file)
R |
A matrix containing the genotypes with one line for each individual and one column for each SNP. The missing genotypes have to be encoded with the value 9. |
output.file |
A character string containing a path to the output file,
a genotypic matrix in the |
output.file |
A character string containing a path to the output file,
a genotypic matrix in the |
Eric Frichot
read.lfmm
lfmm.data
lfmm
geno2lfmm
lfmm2geno
ancestrymap2lfmm
ped2lfmm
# Creation of a file called "genotypes.geno" in the working directory, # with 1000 SNPs for 165 individuals. data("tutorial") # write R in a file called "genotypes.lfmm" # Create file: "genotypes.lfmm". write.lfmm(tutorial.R,"genotypes.lfmm") # read the file "genotypes.lfmm". R = read.lfmm("genotypes.lfmm")