GetGOS_ALL {IntramiRExploreR} | R Documentation |
Gene ontology for Target Genes.
GetGOS_ALL(gene, GO = c("DAVID", "topGO"), term = c("GOTERM_BP_ALL", "GOTERM_MF_ALL", "GOTERM_CC_ALL"), geneIdType = "ALIAS", email, path = tempdir(), ontology = c("GO_BP", "GO_MF", "GO_CC"), filename)
gene |
List A String or vector containing the Gene names. |
GO |
A String depicting the chosen GO tool. Choices are "David" and "topGO" |
term |
A String depicting the chosen term. Choices are "GOTERM_BP_ALL","GOTERM_MF_ALL", "GOTERM_CC_ALL". |
geneIdType |
Type of gene Id given as input. Default "ALIAS" |
email |
Email Id to connect to David. |
path |
String. The path where the data is stored if TEXT=TRUE. |
ontology |
Ontology selection for topGO. Choices are "GO_BP","GO_MF","GO_CC". |
filename |
Name of the file to store Gene Ontology. |
Depending upon the ouput choice data is stored in the path specified. Default option prints output to the console.
## Not run: miR="dme-miR-12" a<-Visualisation(miR,mRNA_type=c("GeneSymbol"),method=c("Both"), platform=c("Affy1"),thresh=100) genes<-a$Target_GeneSymbol GetGOS_ALL(genes,GO=c("topGO"),term=c("GO_BP"),path=tempdir(), filename="test") ## End(Not run)