fnSE {InTAD} | R Documentation |
This function collects all genes for signal genomic region inside of Topologically Associated Domains (TADs)
fnSE(id, sigList, tadGR, tss, pickMaxOvlp, nearestTad)
id |
Id of signal from the list |
sigList |
List of signal GRs and their names |
tadGR |
TAD genomic regions |
tss |
Gene transcription start sites |
pickMaxOvlp |
Use TAD with max overlap |
nearestTad |
The table listing TADs nearest to each TSS #' |
The signal is checked if it is lying inside of TAD. Then all genes in this TAD are collected.
Data.frame containing genes connected to signal