distalAdj {InPAS} | R Documentation |
adjust distal CP sites by cleanUpdTSeq
distalAdj(distalCPs, classifier, classifier_cutoff, shift_range, genome, step=1)
distalCPs |
the output of searchDistalCPs |
classifier |
cleanUpdTSeq classifier |
classifier_cutoff |
cutoff value of the classiffier |
shift_range |
the searching range for the better CP sites |
genome |
a BSgenome object |
step |
adjust step, default 1, means adjust by each base by cleanUpdTSeq. |
a list could be input of searchProximalCPs
Jianhong Ou