UTR3TotalCoverage {InPAS} | R Documentation |
extract 3UTR coverage from totalCov according and GRanges object utr3.
UTR3TotalCoverage(utr3, totalCov, gcCompensation = NA, mappabilityCompensation = NA, FFT = FALSE, fft.sm.power = 20)
utr3 |
an GRanges object. must be the output of utr3Annotation |
totalCov |
total coverage of each sample. must be the output of totalCoverage |
gcCompensation |
GC compensation vector. Not support yet. |
mappabilityCompensation |
mappability compensation vector. Not support yet. |
FFT |
Use FFT smooth or not. |
fft.sm.power |
the cut-off frequence of FFT smooth. |
a list. level 1: chromosome; level 2: each transcripts; level3: data matrix
Jianhong Ou