import_single_Vispa2Matrix {ISAnalytics} | R Documentation |
This function allows to read and import an integration matrix
produced as the output of Vispa2 pipeline and converts it to a tidy
format.
import_single_Vispa2Matrix(path, to_exclude = NULL, separator = "\t")
path |
The path to the file on disk |
to_exclude |
Either NULL or a character vector of column names that should be ignored when importing |
separator |
The column delimiter used |
The import series of functions is designed to work in combination
with the use of Vispa2 pipeline, please refer to this article for more
details: VISPA2:
A Scalable Pipeline for High-Throughput Identification and Annotation of
Vector Integration Sites.
For more details on how to properly use these functions, refer to
vignette("How to use import functions", package = "ISAnalytics")
A data.table object in tidy format
Other Import functions:
import_association_file()
,
import_parallel_Vispa2Matrices_auto()
,
import_parallel_Vispa2Matrices_interactive()
path_to_file <- system.file("extdata", "ex_annotated_ISMatrix.tsv.xz", package = "ISAnalytics" ) isa_dataframe <- import_single_Vispa2Matrix(path_to_file)