plotGene {INSPEcT}R Documentation

Plot the pre-modeled and modeled profiles for one gene

Description

A method to see the shapes of the estimated synthesis, degradation and processing rates, pre-RNA and total RNA concentrations (solid thin lines) their variances (dashed lines) and the modeled rates and concentrations (ticker solid line) of a single gene.

Usage

plotGene(
  object,
  ix,
  relative_expression = FALSE,
  fix.yaxis = FALSE,
  priors = TRUE,
  constantModel = FALSE
)

## S4 method for signature 'INSPEcT'
plotGene(
  object,
  ix,
  relative_expression = FALSE,
  fix.yaxis = FALSE,
  priors = TRUE,
  constantModel = FALSE
)

Arguments

object

An object of class INSPEcT

ix

Eiher a rowname or a row number to select one single gene

relative_expression

A logical, indicating whether expressions are rates should be plotted relative to their initial value (Default=FALSE).

fix.yaxis

A logical, indicating whether the limits for y-axis of degradation and processing rates should be fixed relative to their distributions

priors

A logical, if true the priors of the rates are plotted

constantModel

A logical, if true the constant model for the + nascent modeling are shown

Value

A list containing total RNA levels and their confidence interval (levels plus and minus one standard deviation), pre-RNA lelevs and their confidence intervals, synthsis rates and their confidence intervals, degradation rates and processing rates of the selected gene.

Examples

nascentInspObj10 <- readRDS(system.file(package='INSPEcT', 'nascentInspObj10.rds'))
plotGene(nascentInspObj10, 1)

[Package INSPEcT version 1.20.0 Index]