buildXYData {Glimma} | R Documentation |
Common processing steps for both MA, XY and volcano plots.
Expects a dataframe, table
, which contains two columns labelled xlab
and ylab
as well as a unique identifier column labelled gene
.
buildXYData( table, status, main, display.columns, anno, counts, xlab, ylab, status.cols, sample.cols, groups, transform.counts )
table |
dataframe containing xlab and ylab columns for plotting. |
status |
vector of length |
main |
character string for the main title of summary plot. |
display.columns |
character vector containing names of columns from |
anno |
dataframe with |
counts |
numeric matrix with |
xlab |
character string for the x-axis label of summary plot. |
ylab |
character string for the y-axis label of summary plot. |
status.cols |
vector of length 3 containing valid CSS strings for colours associated
with |
sample.cols |
character vector of length |
groups |
vector of length |
transform.counts |
the type of transform used on the counts log-cpm by default.
|
object for XY plot internal use