maxLocation {GeneStructureTools}R Documentation

Find the largest distance between two vectors of numbers Helper function for get_orfs

Description

Find the largest distance between two vectors of numbers Helper function for get_orfs

Usage

maxLocation(startSite, stopSite, longest = 1)

Arguments

startSite

vector of start sites - i.e Met amino acid positions

stopSite

vector of stop sites - i.e Stop (*) amino acid positions

longest

which pair to return (1 = longest pair, 2= 2nd longest pair etc.)

Value

sequential start site and end site with the greatest difference

Author(s)

Beth Signal

See Also

Other ORF annotation: getOrfs, getUOrfs, orfSimilarity

Examples

starts <- c(1,10,15,25)
stops <- c(4,16,50,55)
# longest start site = 25, longest stop site = 50
maxLocation(starts, stops, longest = 1)
starts <- c(1,10,15,25)
stops <- c(4,14,50,55)
# longest start site = 15, longest stop site = 50
maxLocation(starts, stops, longest = 1)
# 2nd longest start site = 10, 2nd longest stop site = 14
maxLocation(starts, stops, longest = 2)

[Package GeneStructureTools version 1.10.0 Index]