DEXSeqIdsToGeneIds {GeneStructureTools}R Documentation

Convert DEXSeq ids to gene ids

Description

Convert DEXSeq ids to gene ids

Usage

DEXSeqIdsToGeneIds(DEXSeqIds, removeVersion = FALSE, containsE = TRUE)

Arguments

DEXSeqIds

vector of DEXSeq group or exon ids

removeVersion

remove the version (.xx) of the gene?

containsE

do the DEXSeq exons ids contain :E00X?

Value

vector of unique gene ids

Author(s)

Beth Signal

See Also

Other DEXSeq processing methods: findDEXexonType, summariseExonTypes

Examples

# multiple genes in name
DEXSeqId <- "ENSMUSG00000027618.17+ENSMUSG00000098950.7+ENSMUSG00000089824.10+ENSMUSG00000074643.12"
DEXSeqIdsToGeneIds(DEXSeqId)

# exonic part number in id
DEXSeqIdsToGeneIds("ENSMUSG00000001017.15:E013", removeVersion=TRUE)

[Package GeneStructureTools version 1.10.0 Index]