readWhippetPSIfiles {GeneStructureTools} | R Documentation |
Read in a list of whippet .psi.gz files and format as a data.frame
readWhippetPSIfiles(files, attribute = "Total_Reads", maxNA = NA)
files |
vector of *.psi.gz file names |
attribute |
which attribute from the PSI files to use (Total_Reads, Psi, CI_width) |
maxNA |
maximum number of NA values allowed before a site is removed |
data.frame with junction counts for all files
Beth Signal
Other whippet data processing: coordinates
,
diffSplicingResults
,
filterWhippetEvents
,
formatWhippetEvents
,
junctions
, readCounts
,
readWhippetDIFFfiles
,
readWhippetDataSet
,
readWhippetJNCfiles
,
whippetTranscriptChangeSummary
whippetFiles <- list.files(system.file("extdata","whippet/", package = "GeneStructureTools"), full.names = TRUE) psiFiles <- whippetFiles[grep(".psi", whippetFiles)] whippetPSI <- readWhippetPSIfiles(psiFiles)