data.SNP {GeneGeneInteR} | R Documentation |
A case-control dataset containing the genotypes of 312 SNPs from 17 genes in a total of 429 patients (266 individuals affected by Rheumatoid Arthritis and 163 Health controls)
data(data.SNP)
A list with 3 objects:
SnpMatrix object with 312 SNPs and 429 individuals.
a data frame where each SNP is described by its rs ID, its position and the gene it belongs to.
Factor vector of length 429 with 2 levels ("Health Control or
"Rheumatoid"). Y
correspond to the case-control status response variable.
A dataset containing the genotypes of 312 SNPs from 17 genes in a total of 429 patients.
All three objects were taken from NCBI web site and are part of the
GSE39428
series
Chang X., et al. Investigating a pathogenic role for TXNDC5 in tumors. Int. J. Oncol., 43(6): 1871-84, 2013.