getPATHList {GeneAnswers} | R Documentation |
Function to retrieve KEGG category IDs containing given genes.
getPATHList(geneVector, lib)
geneVector |
an Entrez gene IDs vector |
lib |
annotation library to be used to retrieve KEGG IDs. |
The current version only supports Bioconductor team maintained annotation libraries, like 'org.Bt.eg.db', 'org.Ce.eg.db', 'org.Cf.eg.edu', 'org.Dm.eg.db', 'org.Dr.eg.db', 'org.EcK12.eg.db', 'org.EcSakai.eg.db', 'org.Gg.eg.db', 'org.Hs.eg.db', 'org.Mm.eg.db', 'org.Rn.eg.db' and 'org.Ss.eg.db'.
return a KEGG genes ID list, names of the list are KEGG IDs and elements are genes IDs.
Gang Feng, Pan Du and Simon Lin
Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10
a <- getPATHList(c('56458', '16590'), 'org.Mm.eg.db') length(a)