GSALightning-package {GSALightning} | R Documentation |
GSALightning provides a fast implementation of permutation-based gene set analysis for two-sample problem. This package is particularly useful when testing simultaneously a large number of gene sets, or when a large number of permutations is necessary for more accurate p-values estimation.
Index of help topics:
GSALight Fast Permutation-based Gene Set Analysis GSALightning-package Fast Permutation-based Gene Set Analysis expression Breast Cancer Data from The Cancer Genome Atlas (TCGA) permTestLight Fast Single-Gene Permutation Test sampleInfo Sample Information for the Breast Cancer Data from The Cancer Genome Atlas (TCGA) targetGenes Target Genes of Distal Regulatory Elements wilcoxTest Single-Gene Mann Whitney Wilcoxon Test
Billy Heung Wing Chang
Maintainer: Billy Heung Wing Chang <billyheungwing@gmail.com>
BHW Chang and W Tian (2015). GSA-Lightning: Ultra Fast Permutation-based Gene Set Analysis. Bioinformatics. doi: 10.1093/bioinformatics/btw349
B Efron and RJ Tibshirani (2007). "On testing the significance of sets of genes." The annals of applied statistics 1(1):107-129