gwSnpTests {GGtools} | R Documentation |
execute a series of tests for association between genotype and expression
gwSnpTests(sym, sms, ...) topSnps(x, n=10)
sym |
|
sms |
instance of |
x |
instance of |
n |
integer, number of test results to be reported, sorted decreasing from the most significant |
... |
not used |
The plot
method for gwSnpScreenResult
instances
takes a second argument, the name of a Bioconductor SNPlocs.*
package.
an instance of the gwSnpScreenResult class,
to be examined by topSnps
The most basic application yields one d.f. chi-squared statistics based on score tests.
VJ Carey <stvjc@channing.harvard.edu>
s20 = getSS("GGtools", "20") t1 = gwSnpTests(genesym("CPNE1")~male, s20) topSnps(t1) ## Not run: plot(t1, snplocsDefault()) ## End(Not run)