writeTrackFiles {FourCSeq} | R Documentation |
assay
The files are saved in the specified folder. The filenames are the combination of the assay name, the selected column name and the corresponding file extension.
writeTrackFiles( object, assay = "counts", folder = "tracks", format = "bw", removeZeros = TRUE )
object |
A |
assay |
Character vector selecting the assay of the |
folder |
Path relative to the project folder, where the results are track files should be saved. |
format |
Character vector specifying the format of the output. Can either be 'bedGraph' or 'bw'. 'bw' is the default. |
removeZeros |
Define whether fragments with zero counts should be included with value 0 or not. On default zeros are removed. |
writeTrackFiles
Message whether the track export of assay was successful.
Felix A. Klein, felix.klein@embl.de
data(fc, package="FourCSeq") metadata(fc)$projectPath = tempdir() fc <- combineFragEnds(fc) fc writeTrackFiles(fc)