GetMetaclusters {FlowSOM} | R Documentation |
Get metacluster label for all individual cells
GetMetaclusters(fsom, meta = NULL)
fsom |
FlowSOM object as generated by the FlowSOM function or the BuildSOM function |
meta |
Metacluster label for each FlowSOM cluster. If this is NULL, the fsom argument should be as generated by the FlowSOM function, and fsom$metaclustering will be used. |
vector label for every cell
fileName <- system.file("extdata", "68983.fcs", package="FlowSOM") flowSOM.res <- FlowSOM(fileName, compensate=TRUE,transform=TRUE, scale=TRUE,colsToUse=c(9,12,14:18),nClus=10) metacluster_labels <- GetMetaclusters(flowSOM.res) metacluster_labels <- GetMetaclusters(flowSOM.res$FlowSOM, meta = flowSOM.res$metaclustering)