seqToOrg {FindMyFriends}R Documentation

Get gene-to-organism relationship

Description

This method returns the organism membership for each gene in the pangenome as a vector of indices. Element 1 corresponds to gene 1 and the value is the index of the corresponding organism.

Usage

seqToOrg(object)

## S4 method for signature 'pgInMem'
seqToOrg(object)

Arguments

object

A pgVirtual subclass

Value

An integer vector with an element for each gene in the pangenome.

Methods (by class)

Note

Required for extending the class system of FindMyFriends

See Also

seqToGeneGroup for gene-to-genegroup relationship

Examples

testPG <- .loadPgExample(withGroups=TRUE)

# Stored sequentially so the first will belong to organism 1
head(seqToOrg(testPG))


[Package FindMyFriends version 1.19.0 Index]