translated {FindMyFriends} | R Documentation |
This method checks whether the genes in the pangenome are on translated form (amino acid sequences) or not. A return value of FALSE only indicates that the storage mode for the genes is not an AAStringSet. While this leaves room for both RNA-, DNA- and BStringSet, only DNAStringSet makes much sense and is therefore assumed
translated(object) ## S4 method for signature 'pgVirtual' translated(object)
object |
A pgVirtual subclass |
A boolean indicating whether genes are translated (TRUE) or not (FALSE)
pgVirtual
: Sequence type check for pgVirtual subclasses
testPG <- .loadPgExample() # Genes are translated translated(testPG) # ... and therefore returned as AAStringSet instead of DNAStringSet class(genes(testPG, subset=1))